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antiparallel strands

BiochemistryDNA structureNucleic acidsProtein secondary structure

Summary

Antiparallel strands run in opposite directions. In a DNA double helix, one strand runs 5'→3' while its partner runs 3'→5', which lets the base pairs line up; β-pleated sheets can also be antiparallel. Most testable: a new strand is read off its template in the opposite direction.

Detail

Meaning: In double-stranded DNA the two strands are complementary and oriented oppositely, so the 5' end of one strand sits beside the 3' end of the other. This geometry lets A–T (two hydrogen bonds) and G–C (three) pair along the helix. The same word is used for β-pleated sheets, where neighboring strands can run N→C in opposite directions (antiparallel) or in the same direction (parallel); both occur.

On the MCAT: You may be asked to write the complementary strand. For 5'-ATGC-3', the partner is 3'-TACG-5', which reads 5'-GCAT-3'. Antiparallel orientation also explains replication and transcription. Polymerases add nucleotides only to the 3' end of the growing chain, so synthesis always proceeds 5'→3' and the template is read 3'→5'. Because the two template strands run opposite ways at a replication fork, one new strand is made continuously (leading) and the other in Okazaki fragments (lagging). A new RNA is antiparallel to its template and has the same sequence as the coding strand, with U in place of T.

Common confusion: Students write the complement in the same left-to-right direction and forget to flip it. The complement of 5'-ATGC-3' is 3'-TACG-5', so to give the answer 5'→3' you must also reverse it. Antiparallel describes direction, not a mirror-image handedness; the DNA helix is right-handed in its common B form.

Sources

  • Lehninger Principles of Biochemistry
  • Biochemistry (Berg, Tymoczko, Stryer)

Written for the MCAT and checked before it was published. For study reference only. Spotted an error? Let us know.

antiparallel strands: MCAT Glossary